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Eukaryotic genomic databases : methods and protocols

Eukaryotic genomic databases : methods and protocols

자료유형
단행본
개인저자
Kollmar, Martin.
서명 / 저자사항
Eukaryotic genomic databases : methods and protocols / edited by Martin Kollmar.
발행사항
New York, NY :   Humana Press :   Springer,   c2018.  
형태사항
xvi, 581 p. : ill. (chiefly col.) ; 27 cm.
총서사항
Methods in molecular biology,1940-6029 ; volume 1757
ISBN
9781493977369
내용주기
Identifying sequenced eukaryotic genomes and transcriptomes with diArk / Martin Kollmar and Dominic Simm -- Introduction to the Saccharomyces genome database (SGD) / Olivia W. Lang, Robert S. Nash, Sage T. Hellerstedt, Stacia R. Engel, and The SGD Project -- Using the Candida genome database / Marek S. Skrzypek, Jonathan Binkley, and Gavin Sherlock -- PomBase : the scientific resource for fission yeast / Antonia Lock, Kim Rutherford, Midori A. Harris, and Valerie Wood -- EuPathDB : the eukaryotic pathogen genomics database resource / Susanne Warrenfeltz, Evelina Y. Basenko, Kathryn Crouch, Omar S. Harb, Jessica C. Kissinger, David S. Roos, Achchuthan Shanmugasundram, and Fatima Silva-Franco -- Ensembl genome browser : strategies for accessing eukaryotic genome data / Victoria Newman, Benjamin Moore, Helen Sparrow, and Emily Perry -- Mouse genome informatics (MGI) is the international resource for information on the laboratory mouse / MeiYee Law and David R. Shaw -- Primer for the rat genome database (RGD) / Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Jennifer R. Smith, Victoria Petri, Matthew J. Hoffman, Jeff De Pons, Marek A. Tutaj, Omid Ghiasvand, Monika Tutaj, Jyothi Thota, Melinda R. Dwinell, and Mary Shimoyama -- Bovine genome Ddatabase : tools for mining the Bos taurus genome / Darren E. Hagen, Deepak R. Unni, Aditi Tayal, Gregory W. Burns, and Christine G. Elsik -- Navigating Xenbase : an integrated Xenopus genomics and gene expression database / Christina James-Zorn, Virgilio Ponferrada, Malcolm E. Fisher, Kevin Burns, Joshua Fortriede, Erik Segerdell, Kamran Karimi, Vaneet Lotay, Dong Zhuo Wang, Stanley Chu, Troy Pells, Ying Wang, Peter D. Vize, and Aaron Zorn -- Using ZFIN : data types, organization, and retrieval / Ceri E. Van Slyke, Yvonne M. Bradford, Douglas G. Howe, David S. Fashena, Sridhar Ramachandran, Leyla Ruzicka, and ZFIN Staff -- EchinoBase : tools for Echinoderm genome analyses / Gregory A. Cary, R. Andrew Cameron, and Veronica F. Hinman -- Multi-omics database for parasitic nematodes and trematodes / John Martin, Rahul Tyagi, Bruce A. Rosa, and Makedonka Mitreva -- Using WormBase: a genome biology resource for Caenorhabditis elegans and related nematodes / Christian Grove, Scott Cain, Wen J. Chen, Paul Davis, Todd Harris, Kevin L. Howe, Ranjana Kishore, Raymond Lee, Michael Paulini, Daniela Raciti, Mary Ann Tuli, Kimberly Van Auken, Gary Williams, and The WormBase Consortium -- Using WormBase ParaSite : an integrated platform for exploring helminth genomic data / Bruce J. Bolt, Faye H. Rodgers, Myriam Shafie, Paul J. Kersey, Matthew Berriman, and Kevin L. Howe -- Using FlyBase to find functionally related Drosophila genes / Alix J. Rey, Helen Attrill, Steven J. Marygold, and The FlyBase Consortium -- Hymenoptera genome database : using HymenopteraMine to enhance genomic studies of hymenopteran insects / Christine G. Elsik, Aditi Tayal, Deepak R. Unni, Gregory W. Burns, and Darren E. Hagen -- Navigating the i5k Workspace@NAL : a resource for Arthropod genomes / Monica F. Poelchau, Mei-Ju May Chen, Yu-Yu Lin, and Christopher P. Childers.
서지주기
Includes bibliographical references and index.
일반주제명
Eukaryotic cells --Genetics --Databases --Laboratory manuals. Eukaryotic Cells. Genome. Computational Biology.
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260 ▼a New York, NY : ▼b Humana Press : ▼b Springer, ▼c c2018.
300 ▼a xvi, 581 p. : ▼b ill. (chiefly col.) ; ▼c 27 cm.
490 1 ▼a Methods in molecular biology, ▼x 1940-6029 ; ▼v volume 1757
490 1 ▼a Springer protocols
504 ▼a Includes bibliographical references and index.
505 0 0 ▼t Identifying sequenced eukaryotic genomes and transcriptomes with diArk / ▼r Martin Kollmar and Dominic Simm -- ▼t Introduction to the Saccharomyces genome database (SGD) / ▼r Olivia W. Lang, Robert S. Nash, Sage T. Hellerstedt, Stacia R. Engel, and The SGD Project -- ▼t Using the Candida genome database / ▼r Marek S. Skrzypek, Jonathan Binkley, and Gavin Sherlock -- ▼t PomBase : the scientific resource for fission yeast / ▼r Antonia Lock, Kim Rutherford, Midori A. Harris, and Valerie Wood -- ▼t EuPathDB : the eukaryotic pathogen genomics database resource / ▼r Susanne Warrenfeltz, Evelina Y. Basenko, Kathryn Crouch, Omar S. Harb, Jessica C. Kissinger, David S. Roos, Achchuthan Shanmugasundram, and Fatima Silva-Franco -- ▼t Ensembl genome browser : strategies for accessing eukaryotic genome data / ▼r Victoria Newman, Benjamin Moore, Helen Sparrow, and Emily Perry -- ▼t Mouse genome informatics (MGI) is the international resource for information on the laboratory mouse / ▼r MeiYee Law and David R. Shaw -- ▼t Primer for the rat genome database (RGD) / ▼r Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Jennifer R. Smith, Victoria Petri, Matthew J. Hoffman, Jeff De Pons, Marek A. Tutaj, Omid Ghiasvand, Monika Tutaj, Jyothi Thota, Melinda R. Dwinell, and Mary Shimoyama -- ▼t Bovine genome Ddatabase : tools for mining the Bos taurus genome / ▼r Darren E. Hagen, Deepak R. Unni, Aditi Tayal, Gregory W. Burns, and Christine G. Elsik -- ▼t Navigating Xenbase : an integrated Xenopus genomics and gene expression database / ▼r Christina James-Zorn, Virgilio Ponferrada, Malcolm E. Fisher, Kevin Burns, Joshua Fortriede, Erik Segerdell, Kamran Karimi, Vaneet Lotay, Dong Zhuo Wang, Stanley Chu, Troy Pells, Ying Wang, Peter D. Vize, and Aaron Zorn -- ▼t Using ZFIN : data types, organization, and retrieval / ▼r Ceri E. Van Slyke, Yvonne M. Bradford, Douglas G. Howe, David S. Fashena, Sridhar Ramachandran, Leyla Ruzicka, and ZFIN Staff -- ▼t EchinoBase : tools for Echinoderm genome analyses / ▼r Gregory A. Cary, R. Andrew Cameron, and Veronica F. Hinman -- ▼t Multi-omics database for parasitic nematodes and trematodes / ▼r John Martin, Rahul Tyagi, Bruce A. Rosa, and Makedonka Mitreva -- ▼t Using WormBase: a genome biology resource for Caenorhabditis elegans and related nematodes / ▼r Christian Grove, Scott Cain, Wen J. Chen, Paul Davis, Todd Harris, Kevin L. Howe, Ranjana Kishore, Raymond Lee, Michael Paulini, Daniela Raciti, Mary Ann Tuli, Kimberly Van Auken, Gary Williams, and The WormBase Consortium -- ▼t Using WormBase ParaSite : an integrated platform for exploring helminth genomic data / ▼r Bruce J. Bolt, Faye H. Rodgers, Myriam Shafie, Paul J. Kersey, Matthew Berriman, and Kevin L. Howe -- ▼t Using FlyBase to find functionally related Drosophila genes / ▼r Alix J. Rey, Helen Attrill, Steven J. Marygold, and The FlyBase Consortium -- ▼t Hymenoptera genome database : using HymenopteraMine to enhance genomic studies of hymenopteran insects / ▼r Christine G. Elsik, Aditi Tayal, Deepak R. Unni, Gregory W. Burns, and Darren E. Hagen -- ▼t Navigating the i5k Workspace@NAL : a resource for Arthropod genomes / ▼r Monica F. Poelchau, Mei-Ju May Chen, Yu-Yu Lin, and Christopher P. Childers.
650 0 ▼a Eukaryotic cells ▼x Genetics ▼x Databases ▼v Laboratory manuals.
650 2 ▼a Eukaryotic Cells. ▼0 (DNLM)D005057.
650 2 ▼a Genome. ▼0 (DNLM)D016678.
650 2 ▼a Computational Biology. ▼0 (DNLM)D019295.
700 1 ▼a Kollmar, Martin.
830 0 ▼a Springer protocols.
830 0 ▼a Methods in molecular biology (Clifton, N.J.) ; ▼v v. 1757.
945 ▼a KLPA

소장정보

No. 소장처 청구기호 등록번호 도서상태 반납예정일 예약 서비스
No. 1 소장처 과학도서관/Sci-Info(2층서고)/ 청구기호 571.6 E87 등록번호 121245461 도서상태 대출가능 반납예정일 예약 서비스 B M

컨텐츠정보

책소개

Preface...

Table of Contents...

Contributing Authors...


1. Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk

Martin Kollmar and Dominic Simm


2. An Introduction to the Saccharomyces Genome Database (SGD)

Olivia W. Lang, Robert S. Nash, Sage T. Hellerstedt, Stacia R. Engel, and the SGD Project


3. Using the Candida Genome Database

Marek S. Skrzypek, Jonathan Binkley, and Gavin Sherlock


4. PomBase: The Scientific Resource for Fission Yeast

Antonia Lock, Kim Rutherford, Midori A. Harris, and Valerie Wood


5. EuPathDB: The Eukaryotic Pathogen Genomics Database Resource

Susanne Warrenfeltz, Evelina Y. Basenko, Kathryn Crouch, Omar S. Harb, Jessica C. Kissinger, David S. Roos, Achchuthan Shanmugasundram, and Fatima Silva-Franco


6. The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data

Victoria Newman, Benjamin Moore, Helen Sparrow, and Emily Perry


7. Mouse Genome Informatics (MGI) is the International Resource for Information on the Laboratory Mouse

MeiYee Law and David R. Shaw


8. A Primer for the Rat Genome Database (RGD)

Stanley J.F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Jennifer R. Smith, Victoria Petri, Matthew J. Hoffman, Jeff De Pons, Marek A. Tutaj, Omid Ghiasvand, Monika Tutaj, Jyothi Thota, Melinda R. Dwinell, and Mary Shimoyama


9. Bovine Genome Database: Tools for Mining the Bos taurus Genome

Darren E. Hagen, Deepak R. Unni, Aditi Tayal, Gregory W. Burns, and Christine G. Elsik


10. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database

Christina James-Zorn, Virgilio Ponferrada, Malcolm E. Fisher, Kevin Burns, Joshua Fortriede, Eri Segerdell, Kamran Karimi, Vaneet Lotay, Dong Zhou Wang, Stanley Chu, Troy Pells, Ying Wang, Peter D. Vize, and Aaron Zorn


11. Using ZFIN: Data Types, Organization and Retrieval

Ceri E. Van Slyke, Yvonne M. Bradford, Douglas G. Howe, David S. Fashena, Sridhar Ramachandran, Leyla Ruzicka, and ZFIN Staff


12. EchinoBase: Tools for Echinoderm Genome Analyses

Gregory A. Cary, Andy Cameron, and Veronia F. Hinman


13. A Multi-Omics Database for Parasitic Nematodes and Trematodes

John Martin, Rahul Tyagi, Bruce A. Rosa, and Makedonka Mitreva


14. Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes

Christian Grove, Scott Cain, Wen J. Chen, Paul Davis, Todd Harris, Kevin Howe, Ranjana Kishore, Raymond Lee, Michael Paulini, Daniela Raciti, Mary Ann Tuli, Kimberly Van Auken, Gary Williams, and the The WormBase Consortium


15. Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data

Bruce J. Bolt, Faye H. Rodgers, Myriam Shafie, Paul J. Kersey, Matthew Berriman, and Kevin L. Howe


16. Using FlyBase to Find Functionally Related Drosophila Genes

Alix J. Rey, Helen Attrill, Steven J. Marygold, and the FlyBase Consortium


17. Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects

Christine G. Elsik, Aditi Tayal, Deepak R. Unni, Gregory W. Burns, and Darren E. Hagen


18. Navigating the i5k Workspace@NAL: A Resource for Arthropod Genomes

Monica F. Poelchau, Mei-Ju May Chen, Yu-Yu Lin, and Christopher P. Childers


정보제공 : Aladin

목차

CONTENTS
Preface = v
Acknowledgment = vii
Contributors = ix 
1 Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk / Martin Kollmar ; Dominic Simm = 1
2 An Introduction to the Saccharomyces Genome Database (SGD) / Olivia W. Lang ; Robert S. Nash ; Sage T. Hellerstedt ; Stacia R. Engel ;The SGD Project = 21
3 Using the Candida Genome Database / Marek S. Skrzypek ; Jonathan Binkley ; Gavin Sherlock = 31
4 PomBase : The Scientific Resource for Fission Yeast / Antonia Lock ; Kim Rutherford ; Midori A. Harris ; Valerie Wood = 49
5 EuPathDB : The Eukaryotic Pathogen Genomics Database Resource / Susanne Warrenfeltz ; Evelina Y. Basenko ; Kathryn Crouch ; Omar S. Harb ; Jessica C. Kissinger ; David S. Roos ; Achchuthan Shanmugasundram ; Fatima Silva-Franco = 69
6 The Ensembl Genome Browser : Strategies for Accessing Eukaryotic Genome Data / Victoria Newman ; Benjamin Moore ; Helen Sparrow ; Emily Perry = 115
7 Mouse Genome Informatics (MGI) Is the International Resource for Information on the Laboratory Mouse / MeiYee Law ; David R. Shaw = 141
8 A Primer for the Rat Genome Database (RGD) / Stanley J.F. Laulederkind ; G. Thomas Hayman ; Shur-Jen Wang ; Jennifer R. Smith ; Victoria Petri ; Matthew J. Hoffman ; Jeff De Pons ; Marek A. Tutaj ; Omid Ghiasvand ; Monika Tutaj ; Jyothi Thota ; Melinda R. Dwinell ; Mary Shimoyama = 163
9 Bovine Genome Database : Tools for Mining the Bos taurus Genome / Darren E. Hagen ; Deepak R. Unni ; Aditi Tayal ; Gregory W. Burns ; Christine G. Elsik = 211
10 Navigating Xenbase : An Integrated Xenopus Genomics and Gene Expression Database / Christina James-Zorn ; Virgilio Ponferrada ; Malcolm E. Fisher ; Kevin Burns ; Joshua Fortriede ; Eri Segerdell ; Kamran Karimi ; Vaneet Lotay ; Dong Zhou Wang ; Stanley Chu ; Troy Pells ; Ying Wang ; Peter D. Vize ; Aaron Zorn = 251
11 Using ZFIN : Data Types, Organization and Retrieval / Ceri E. Van Slyke ; Yvonne M. Bradford ; Douglas G. Howe ; David S. Fashena ; Sridhar Ramachandran ; Leyla Ruzicka ; ZFIN Staff = 307
12 EchinoBase : Tools for Echinoderm Genome Analyses / Gregory A. Cary ; Andy Cameron ; Veronia F. Hinman = 349
13 A Multi-Omics Database for Parasitic Nematodes and Trematodes / John Martin ; Rahul Tyagi ; Bruce A. Rosa ; Makedonka Mitreva = 371
14 Using WormBase : A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes / Christian Grove ; Scott Cain ; Wen J. Chen ; Paul Davis ; Todd Harris ; Kevin Howe ; Ranjana Kishore ; Raymond Lee ; Michael Paulini ; Daniela Raciti ; Mary Ann Tuli ; Kimberly Van Auken ; Gary Williams ; The WormBase Consortium = 399
15 Using WormBase ParaSite : An Integrated Platform for Exploring Helminth Genomic Data / Bruce J. Bolt ; Faye H. Rodgers ; Myriam Shafie ; Paul J. Kersey ; Matthew Berriman ; Kevin L. Howe = 471
16 Using FlyBase to Find Functionally Related Drosophila Genes / Alix J. Rey ; Helen Attrill ; Steven J. Marygold ; The FlyBase Consortium = 493
17 Hymenoptera Genome Database : Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects / Christine G. Elsik ; Aditi Tayal ; Deepak R. Unni ; Gregory W. Burns ; Darren E. Hagen = 513
18 Navigating the i5k Workspace@NAL : A Resource for Arthropod Genomes / Monica F. Poelchau ; Mei-Ju May Chen ; Yu-Yu Lin ; Christopher P. Childers = 557

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